Support MPFR floats in numkondo

Remove '-D' option (error tolerance) in numkondo

Changelog

@@ -1,3 +1,9 @@
+1.4:
+  * Support MPFR floats in numkondo.
+
+  * Remove '-D' option (error tolerance) in numkondo.
+
+
 1.3.1:
   
   * '-C' flag in meantools-derive:

INSTALL

@@ -6,6 +6,8 @@
 
 * meankondo should work on any POSIX compliant system, such as GNU/Linux or OSX.
 
+* meankondo is linked against the GNU MPFR and GNU GMP libraries.
+
 * Compiling:
   Run
     make

LGPL3

@@ -0,0 +1,165 @@
+                   GNU LESSER GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+
+  This version of the GNU Lesser General Public License incorporates
+the terms and conditions of version 3 of the GNU General Public
+License, supplemented by the additional permissions listed below.
+
+  0. Additional Definitions.
+
+  As used herein, "this License" refers to version 3 of the GNU Lesser
+General Public License, and the "GNU GPL" refers to version 3 of the GNU
+General Public License.
+
+  "The Library" refers to a covered work governed by this License,
+other than an Application or a Combined Work as defined below.
+
+  An "Application" is any work that makes use of an interface provided
+by the Library, but which is not otherwise based on the Library.
+Defining a subclass of a class defined by the Library is deemed a mode
+of using an interface provided by the Library.
+
+  A "Combined Work" is a work produced by combining or linking an
+Application with the Library.  The particular version of the Library
+with which the Combined Work was made is also called the "Linked
+Version".
+
+  The "Minimal Corresponding Source" for a Combined Work means the
+Corresponding Source for the Combined Work, excluding any source code
+for portions of the Combined Work that, considered in isolation, are
+based on the Application, and not on the Linked Version.
+
+  The "Corresponding Application Code" for a Combined Work means the
+object code and/or source code for the Application, including any data
+and utility programs needed for reproducing the Combined Work from the
+Application, but excluding the System Libraries of the Combined Work.
+
+  1. Exception to Section 3 of the GNU GPL.
+
+  You may convey a covered work under sections 3 and 4 of this License
+without being bound by section 3 of the GNU GPL.
+
+  2. Conveying Modified Versions.
+
+  If you modify a copy of the Library, and, in your modifications, a
+facility refers to a function or data to be supplied by an Application
+that uses the facility (other than as an argument passed when the
+facility is invoked), then you may convey a copy of the modified
+version:
+
+   a) under this License, provided that you make a good faith effort to
+   ensure that, in the event an Application does not supply the
+   function or data, the facility still operates, and performs
+   whatever part of its purpose remains meaningful, or
+
+   b) under the GNU GPL, with none of the additional permissions of
+   this License applicable to that copy.
+
+  3. Object Code Incorporating Material from Library Header Files.
+
+  The object code form of an Application may incorporate material from
+a header file that is part of the Library.  You may convey such object
+code under terms of your choice, provided that, if the incorporated
+material is not limited to numerical parameters, data structure
+layouts and accessors, or small macros, inline functions and templates
+(ten or fewer lines in length), you do both of the following:
+
+   a) Give prominent notice with each copy of the object code that the
+   Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the object code with a copy of the GNU GPL and this license
+   document.
+
+  4. Combined Works.
+
+  You may convey a Combined Work under terms of your choice that,
+taken together, effectively do not restrict modification of the
+portions of the Library contained in the Combined Work and reverse
+engineering for debugging such modifications, if you also do each of
+the following:
+
+   a) Give prominent notice with each copy of the Combined Work that
+   the Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the Combined Work with a copy of the GNU GPL and this license
+   document.
+
+   c) For a Combined Work that displays copyright notices during
+   execution, include the copyright notice for the Library among
+   these notices, as well as a reference directing the user to the
+   copies of the GNU GPL and this license document.
+
+   d) Do one of the following:
+
+       0) Convey the Minimal Corresponding Source under the terms of this
+       License, and the Corresponding Application Code in a form
+       suitable for, and under terms that permit, the user to
+       recombine or relink the Application with a modified version of
+       the Linked Version to produce a modified Combined Work, in the
+       manner specified by section 6 of the GNU GPL for conveying
+       Corresponding Source.
+
+       1) Use a suitable shared library mechanism for linking with the
+       Library.  A suitable mechanism is one that (a) uses at run time
+       a copy of the Library already present on the user's computer
+       system, and (b) will operate properly with a modified version
+       of the Library that is interface-compatible with the Linked
+       Version.
+
+   e) Provide Installation Information, but only if you would otherwise
+   be required to provide such information under section 6 of the
+   GNU GPL, and only to the extent that such information is
+   necessary to install and execute a modified version of the
+   Combined Work produced by recombining or relinking the
+   Application with a modified version of the Linked Version. (If
+   you use option 4d0, the Installation Information must accompany
+   the Minimal Corresponding Source and Corresponding Application
+   Code. If you use option 4d1, you must provide the Installation
+   Information in the manner specified by section 6 of the GNU GPL
+   for conveying Corresponding Source.)
+
+  5. Combined Libraries.
+
+  You may place library facilities that are a work based on the
+Library side by side in a single library together with other library
+facilities that are not Applications and are not covered by this
+License, and convey such a combined library under terms of your
+choice, if you do both of the following:
+
+   a) Accompany the combined library with a copy of the same work based
+   on the Library, uncombined with any other library facilities,
+   conveyed under the terms of this License.
+
+   b) Give prominent notice with the combined library that part of it
+   is a work based on the Library, and explaining where to find the
+   accompanying uncombined form of the same work.
+
+  6. Revised Versions of the GNU Lesser General Public License.
+
+  The Free Software Foundation may publish revised and/or new versions
+of the GNU Lesser General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+  Each version is given a distinguishing version number. If the
+Library as you received it specifies that a certain numbered version
+of the GNU Lesser General Public License "or any later version"
+applies to it, you have the option of following the terms and
+conditions either of that published version or of any later version
+published by the Free Software Foundation. If the Library as you
+received it does not specify a version number of the GNU Lesser
+General Public License, you may choose any version of the GNU Lesser
+General Public License ever published by the Free Software Foundation.
+
+  If the Library as you received it specifies that a proxy can decide
+whether future versions of the GNU Lesser General Public License shall
+apply, that proxy's public statement of acceptance of any version is
+permanent authorization for you to choose that version for the
+Library.

Makefile

@@ -18,7 +18,7 @@
 #   if static=1 then link libkondo statically but other libraries dynamically
 STATIC=1
 
-VERSION=1.3.1
+VERSION=1.4
 
 # products of the compilation
 PROJECT_BINS= meankondo numkondo meantools kondo_preprocess meantools-convert
@@ -62,9 +62,9 @@ SRCDIR=./src
 OBJDIR=./objs
 
 # objects
-LIBKONDO_OBJS = $(addprefix $(OBJDIR)/,array.o cli_parser.o coefficient.o fields.o grouped_polynomial.o idtable.o istring.o number.o parse_file.o polynomial.o rational_float.o rational_int.o rcc.o tools.o)
+LIBKONDO_OBJS = $(addprefix $(OBJDIR)/,array.o cli_parser.o coefficient.o fields.o grouped_polynomial.o idtable.o istring.o number.o parse_file.o polynomial.o rational_float.o rational_int.o rcc.o rcc_mpfr.o tools.o)
 MEANKONDO_OBJS = $(addprefix $(OBJDIR)/,meankondo.o mean.o)
-NUMKONDO_OBJS = $(addprefix $(OBJDIR)/,numkondo.o flow.o)
+NUMKONDO_OBJS = $(addprefix $(OBJDIR)/,numkondo.o flow.o flow_mpfr.o)
 MEANTOOLS_OBJS = $(addprefix $(OBJDIR)/,meantools.o meantools_exp.o meantools_deriv.o meantools_eval.o)
 KONDO_PP_OBJS = $(addprefix $(OBJDIR)/,kondo_preprocess.o kondo.o)
 
@@ -78,8 +78,8 @@ XTRA_LIBS=
 ifeq ($(STATIC),1)
   # compile libkondo.a
   PREREQ=static
-  # libkondo is linked against libm
+  # libkondo is linked against libm, libmpfr and libgmp
-  XTRA_LIBS=-lm
+  XTRA_LIBS=-lm -lmpfr -lgmp
   # link binaries using the static library
   LIBKONDO_FLAG=-l:libkondo.a
   # install static lib
@@ -87,8 +87,8 @@ ifeq ($(STATIC),1)
 else ifeq ($(STATIC),2)
   # compile libkondo.a
   PREREQ=static
-  # libkondo is linked against libm
+  # libkondo is linked against libm, libmpfr and libgmp
-  XTRA_LIBS=-lm
+  XTRA_LIBS=-lm -lmpfr -lgmp
   # link binaries statically
   override LDFLAGS += -static
   INSTALLLIB=install-static
@@ -119,17 +119,17 @@ libkondo.a: $(LIBKONDO_OBJS)
 	$(AR) -rc $(BUILDDIR)/lib/$@ $^
 
 libkondo.so.$(VERSION): $(LIBKONDO_OBJS)
-	$(LD) -shared -lm $(LDFLAGS) -o $(BUILDDIR)/lib/$@ $^
+	$(LD) -shared -lm -lmpfr -lgmp $(LDFLAGS) -o $(BUILDDIR)/lib/$@ $^
 	ln -fs ./libkondo.so.$(VERSION) $(BUILDDIR)/lib/libkondo.so
 
 meankondo: $(MEANKONDO_OBJS)
 	$(LD) -L$(BUILDDIR)/lib $(LDFLAGS) -o $(BUILDDIR)/bin/$@ $^ $(LIBKONDO_FLAG) -lpthread $(XTRA_LIBS)
 
 numkondo: $(NUMKONDO_OBJS)
-	$(LD) -L$(BUILDDIR)/lib $(LDFLAGS) -o $(BUILDDIR)/bin/$@ $^ $(LIBKONDO_FLAG) -lm $(XTRA_LIBS)
+	$(LD) -L$(BUILDDIR)/lib $(LDFLAGS) -o $(BUILDDIR)/bin/$@ $^ $(LIBKONDO_FLAG) -lm -lmpfr -lgmp $(XTRA_LIBS)
 
 meantools: $(MEANTOOLS_OBJS)
-	$(LD) -L$(BUILDDIR)/lib $(LDFLAGS) -o $(BUILDDIR)/bin/$@ $^ $(LIBKONDO_FLAG) $(XTRA_LIBS)
+	$(LD) -L$(BUILDDIR)/lib $(LDFLAGS) -o $(BUILDDIR)/bin/$@ $^ $(LIBKONDO_FLAG) -lmpfr -lgmp $(XTRA_LIBS)
 
 meantools-convert:
 	cp scripts/meantools-convert $(BUILDDIR)/bin/

NOTICE

@@ -1,2 +1,15 @@
 meankondo
 Copyright 2015 Ian Jauslin
+
+The numerical values can be represented as multi-precision floats using
+the GNU MPFR library, which is licensed under the GNU Lesser General
+Public License (LGPL) version 3 (see LGPL3 for a copy of the license).
+See
+  http://www.mpfr.org/
+for details.
+
+The GNU MPFR library is based on the GNU GMP library, which is licensed
+under the GNU Lesser General Public License (LGPL) version 3 (see LGPL3
+for a copy of the license).  See
+  http://www.gmplib.org/
+for details.

doc/meankondo-doc.html

@@ -69,10 +69,10 @@
   </head>
 
   <body>
-    <h1 style="margin-bottom:50pt;">meankondo <span style="margin-left:10pt;font-size:18pt">v1.3</span></h1>
+    <h1 style="margin-bottom:50pt;">meankondo <span style="margin-left:10pt;font-size:18pt">v1.4</span></h1>
 
     <p>
-      This is the official documentation for <b>meankondo</b>, version 1.3. The aim of this document is not to give a technical description of how to use the various programs bundled with <b>meankondo</b>, nor is it to explain where hierarchical models come from and what their meaning is, but rather a conceptual overview of how <b>meankondo</b> approaches the computation of flow equations, and how its programs can be made to interact with one another to compute various quantities. For a more technical description, see the man pages included with the <b>meankondo</b> source code. For a more theoretical discussion of Fermionic hierarchical models, see <a href="http://ian.jauslin.org/publications/15bgj">[G.Benfatto, G.Gallavotti, I.Jauslin, 2015]</a>.
+      This is the official documentation for <b>meankondo</b>, version 1.4. The aim of this document is not to give a technical description of how to use the various programs bundled with <b>meankondo</b>, nor is it to explain where hierarchical models come from and what their meaning is, but rather a conceptual overview of how <b>meankondo</b> approaches the computation of flow equations, and how its programs can be made to interact with one another to compute various quantities. For a more technical description, see the man pages included with the <b>meankondo</b> source code. For a more theoretical discussion of Fermionic hierarchical models, see <a href="http://ian.jauslin.org/publications/15bgj">[G.Benfatto, G.Gallavotti, I.Jauslin, 2015]</a>.
     </p>
 
     <h2 style="margin-top:50pt;">Table of contents</h2>
@@ -150,7 +150,7 @@
 	<li><b>external</b>: which are organized in pairs, and are denoted by \((\Psi_i^+,\Psi_i^-)\) for \(i\in\{1,\cdots,E\}\).
 	<li><b>super-external</b>: which denoted by \(H_i\) for \(i\in\{1,\cdots,X\}\) (the only difference with external fields is that super-external fields are not in pairs, which is a seemingly innocuous difference; but super-external fields are meant to be used for different purposes as external fields (see <a href="#flow_equation_definition">Definition</a> below)).
       </ul>
-      The fields are used as a basis for a complex algebra, so that we can take products and linear combinations of fields (in other words, the concept of <i>polynomials over the fields</i> is well defined). Some of the fields (<i>Fermions</i>) anti-commute with each other (two fields \(a\) and \(b\) are said to anti-commute if \(ab\equiv-ba\)), and the rest (<i>Bosons</i>) commute. Which fields are Fermions and which are Bosons is specified in the <code>#!fields</code> entry in the configuration file. <b>(Warning: As of version 1.3, all internal fields must be Fermions.)</b>
+      The fields are used as a basis for a complex algebra, so that we can take products and linear combinations of fields (in other words, the concept of <i>polynomials over the fields</i> is well defined). Some of the fields (<i>Fermions</i>) anti-commute with each other (two fields \(a\) and \(b\) are said to anti-commute if \(ab\equiv-ba\)), and the rest (<i>Bosons</i>) commute. Which fields are Fermions and which are Bosons is specified in the <code>#!fields</code> entry in the configuration file. <b>(Warning: As of version 1.4, all internal fields must be Fermions.)</b>
     </p>
     <p>
       In the configuration file of the <b>meankondo</b> program, the fields are specified in the <code>#!fields</code> entry.
@@ -286,7 +286,15 @@
       Numerical evaluations are not exact. The numbers manipulated <b>meankondo</b> are double precision floating point numbers ("doubles" for short), which are also system-dependent. On systems that follow the IEEE 754 standard, doubles have a precision of 53 bits, which implies they are accurate to 15 decimal places; and the absolute value of doubles is bounded above by \(2^{1024}-2^{1024-53}\) (that is the number whose binary expansion has \(1023\) digits and whose \(53\) left-most digits are \(1\) whereas the others are \(0\)) and below by \(2^{-1022}\).
     </p>-->
     <p>
-      Numerical evaluations are not exact. The numbers manipulated <b>meankondo</b> are "long doubles", which, when compiled for x86 processors, have a precision of 64 bits, which implies they are accurate to 19 decimal places; and the absolute value of doubles is bounded above by \(2^{16384}-2^{16384-64}\) (that is the number whose binary expansion has \(16383\) digits and whose \(64\) left-most digits are \(1\) whereas the others are \(0\)) and below by \(2^{-16382}\).
+      Numerical evaluations are not exact. The numbers manipulated <b>meankondo</b> are either "long doubles" or "MPFR floats", depending on the options passed to <b>numkondo</b> (see <code>man numkondo</code>).
+      <ul>
+	<li>
+	  Long doubles: when compiled for x86 processors, have a precision of 64 bits, which implies they are accurate to 19 decimal places; and the absolute value of doubles is bounded above by \(2^{16384}-2^{16384-64}\) (that is the number whose binary expansion has \(16383\) digits and whose \(64\) left-most digits are \(1\) whereas the others are \(0\)) and below by \(2^{-16382}\).
+	</li>
+	<li>
+	  MPFR floats: the precision and size of the exponent can be specified as options on the command line. The maximal precision and maximal value of the exponent are, on 64 bit systems, \(2^{63}\) bits and \(2^{62}\) respectively.
+	</li>
+      </ul>
     </p>
 
 

man/kondo_preprocess.1

@@ -1,5 +1,5 @@
-.Dd $Mdocdate: April 14 2015 $
+.Dd $Mdocdate: September 22 2015 $
-.Dt kondo_preprocess 1.3.1
+.Dt kondo_preprocess 1.4
 .Os
 .Sh NAME
 .Nm kondo_preprocess

man/meankondo.1

@@ -1,5 +1,5 @@
-.Dd $Mdocdate: April 13 2015 $
+.Dd $Mdocdate: September 22 2015 $
-.Dt meankondo 1.3.1
+.Dt meankondo 1.4
 .Os
 .Sh NAME
 .Nm meankondo

man/meantools-convert.1

@@ -1,5 +1,5 @@
-.Dd $Mdocdate: June 12 2015 $
+.Dd $Mdocdate: September 22 2015 $
-.Dt meantools-convert 1.3.1
+.Dt meantools-convert 1.4
 .Os
 .Sh NAME
 .Nm meantools-convert

man/meantools.1

@@ -1,5 +1,5 @@
-.Dd $Mdocdate: April 14 2015 $
+.Dd $Mdocdate: September 22 2015 $
-.Dt meantools 1.3.1
+.Dt meantools 1.4
 .Os
 .Sh NAME
 .Nm meantools
@@ -19,6 +19,8 @@
 .Nm
 .Sy eval
 .Op Fl R Ar values
+.Op Fl P Ar precision
+.Op Fl E Ar max_exponent
 .Op Ar config_file
 .Pp
 .Sh DESCRIPTION
@@ -136,6 +138,12 @@ The values of the rccs with which to evaluate the flow equation.
 .Ar values
 is formatted like an initial_condition (see
 .Sx numkondo Ns (1) ) .
+.It Fl P Ar precision
+Number of bits used for the significand of numerical values (see 
+.Sx numkondo Ns (1) ) .
+.It Fl E Ar max_exponent
+Largest allowed value for the exponent of numerical values (see
+.Sx numkondo Ns (1) ) .
 .El
 .Pp
 .Sy Configuration file:

man/numkondo.1

@@ -1,5 +1,5 @@
-.Dd $Mdocdate: April 14 2015 $
+.Dd $Mdocdate: September 22 2015 $
-.Dt numkondo 1.3.1
+.Dt numkondo 1.4
 .Os
 .Sh NAME
 .Nm numkondo
@@ -8,8 +8,9 @@
 .Nm
 .Op Fl F
 .Op Fl N Ar niter
-.Op Fl D Ar tolerance
 .Op Fl I Ar initial_condition
+.Op Fl P Ar precision
+.Op Fl E Ar max_exponent
 .Op Ar config_file
 .Pp
 .Nm
@@ -44,12 +45,12 @@ as well as the following pre-processors, which generate configuration files for
 Number of iterations
 .It Fl F
 Only print the last step of the computation, with full precision. The output can be used as an initial condition for further iterations.
-.It Fl D Ar tolerance
-If this option is provided, any number smaller than
-.Ar tolerance
-is set to 0.
 .It Fl I Ar initial_condition
 Set the initial condition from the command-line (overrides the initial condition in the configuration file). The format is the same as the '#!initial_configuration' entry, see below.
+.It Fl P Ar precision
+Number of bits used for the significand of numerical values (see the NUMERICAL PRECISION section). If this option is specified, then numerical values are represented as MPFR floats instead of long doubles, which requires more computating time.
+.It Fl E Ar max_exponent
+Largest allowed value for the exponent of numerical values (see the NUMERICAL PRECISION section). If this option is specified, then numerical values are represented as MPFR floats instead of long doubles, which requires more computating time.
 .It Fl v
 Print version information and exit.
 .El
@@ -145,6 +146,19 @@ If the '-F' flag is provided,
 .Nm
 prints the last step of the iteration to stdout in a format that can be re-used as an initial condition for subsequent iterations.
 .Pp
+.Sh NUMERICAL PRECISION
+Numerical values are represented as floating point numbers, which consist in a significand (or mantissa) and an exponent. The number is given by
+.D1 significand * 2^exponent
+.Pp
+If neither the '-P' nor the '-E' flags are specified, then numerical values are implemented using the 'long double' type, which allocates 64 bits to the significand and 15 to the exponent (this may change depending on the implementation of the C compiler used to compile
+.Nm ) .
+Numbers are therefore accurate to 19 decimal places, and the exponent must be in the interval [-16382 , 16383].
+.Pp
+If one of the '-P' or '-E' flags are specified, then numerical values are implemented using the GNU MPFR library. The number of bits allocated to the significand and exponent can be set by the '-P' and '-E' flags, within the limits set by the MPFR library. These values depend on the implementation of the library. On 64-bit systems, the maximal precision and maximal value of the exponent should be of the order of 2^63 and 2^62 respectively.
+.Pp
+Note that using MPFR floats increases the computing time required to run
+.Nm
+.Pp
 .Sh RETURN CODE
 .Nm
 returns 0 on success and -1 on error.

src/coefficient.c

@@ -18,6 +18,10 @@ limitations under the License.
 
 #include <stdio.h>
 #include <stdlib.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+#include <mpfr.h>
 #include "definitions.cpp"
 #include "rational.h"
 #include "istring.h"
@@ -721,7 +725,7 @@ int evalcoef(RCC rccs, Coefficient coef, long double* out){
   int i,j;
   long double num_factor;
 
-  *out=0;
+  *out=0.;
 
   // for each monomial
   for(i=0;i<coef.length;i++){
@@ -737,3 +741,44 @@ int evalcoef(RCC rccs, Coefficient coef, long double* out){
   }
   return(0);
 }
+
+// evaluate a coefficient on a vector (using mpfr floats)
+int evalcoef_mpfr(RCC_mpfr rccs, Coefficient coef, mpfr_t out){
+  int i,j;
+  mpfr_t num_factor;
+  // tmp number (do not initialize Z)
+  mpfr_t x, y, Z;
+
+  // init numbers
+  mpfr_inits(num_factor, x, y, (mpfr_ptr) NULL);
+
+  mpfr_init(out);
+  mpfr_set_zero(out, 1);
+
+  // for each monomial
+  for(i=0;i<coef.length;i++){
+    // product of factors
+    mpfr_set_flt(num_factor, 1., MPFR_RNDN);
+    for(j=0;j<coef.factors[i].length;j++){
+      mpfr_mul(x,num_factor,rccs.values[intlist_find_err(rccs.indices,rccs.length,coef.factors[i].values[j])], MPFR_RNDN);
+      mpfr_set(num_factor,x, MPFR_RNDN);
+    }
+    // denominator
+    if(coef.denoms[i].power>0){
+      mpfr_pow_si(y, rccs.values[intlist_find_err(rccs.indices,rccs.length,coef.denoms[i].index)], coef.denoms[i].power, MPFR_RNDN);
+      mpfr_div(x, num_factor, y, MPFR_RNDN);
+      mpfr_set(num_factor, x, MPFR_RNDN);
+    }
+
+    number_mpfr_val(Z, coef.nums[i]);
+    mpfr_mul(x, num_factor, Z, MPFR_RNDN);
+    mpfr_add(y, x, out, MPFR_RNDN);
+    mpfr_set(out, y, MPFR_RNDN);
+    mpfr_clear(Z);
+  }
+
+  // free numbers
+  mpfr_clears(num_factor, x, y, (mpfr_ptr)NULL);
+
+  return(0);
+}

src/coefficient.h

@@ -74,5 +74,7 @@ int coef_denom_cmp(coef_denom denom1, coef_denom denom2);
 
 // evaluate a coefficient on a vector
 int evalcoef(RCC rccs, Coefficient coef, long double* out);
+// evaluate a coefficient on a vector (using mpfr floats)
+int evalcoef_mpfr(RCC_mpfr rccs, Coefficient coef, mpfr_t out);
 
 #endif

src/definitions.cpp

@@ -17,7 +17,7 @@ limitations under the License.
 #ifndef DEFINITIONS_GCC
 #define DEFINITIONS_GCC
 
-#define VERSION "1.3.1"
+#define VERSION "1.4"
 
 // number of entries in a configuration file
 #define ARG_COUNT 10

src/flow.c

@@ -24,13 +24,11 @@ limitations under the License.
 #include "number.h"
 #include "array.h"
 #include "coefficient.h"
-
+#include "rcc.h"
 
 
 // compute flow numerically, no exponentials
-//    inputs: flow_equation
+int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, int niter, int display_mode){
-//            init, niter, tol (the allowed error at each step), ls (whether to display the results in terms of ls), display_mode (what to print)
-int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, int niter, long double tol, int display_mode){
   // running coupling contants
   RCC rccs=init;
   int i,j;
@@ -53,7 +51,7 @@ int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, in
 
   for(i=0;i<niter;i++){
     // compute a single step
-    step_flow(&rccs, flow_equation, tol);
+    step_flow(&rccs, flow_equation);
     // convert ls to alphas
     if(display_mode==DISPLAY_NUMERICAL){
       // print the result
@@ -83,14 +81,9 @@ int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, in
 }
 
 // single step in the flow no exponentials
-//          inputs: flow_equation, tol
+int step_flow(RCC* rccs, Grouped_Polynomial flow_equation){
-//   input/outputs: rccs
-int step_flow(RCC* rccs, Grouped_Polynomial flow_equation, long double tol){
   int i;
   long double* new_rccs=calloc((*rccs).length,sizeof(long double));
-  Int_Array computed;
-
-  init_Int_Array(&computed, (*rccs).length);
 
   // initialize vectors to 0
   for(i=0;i<(*rccs).length;i++){
@@ -101,10 +94,6 @@ int step_flow(RCC* rccs, Grouped_Polynomial flow_equation, long double tol){
   for(i=0;i<flow_equation.length;i++){
     if(flow_equation.indices[i]<0){
       evalcoef(*rccs, flow_equation.coefs[i], new_rccs+i);
-      // if the new rcc is too small, then ignore it
-      if(fabs(new_rccs[i])<tol){
-	new_rccs[i]=0.;
-      }
       (*rccs).values[i]=new_rccs[i];
     }
   }
@@ -113,10 +102,6 @@ int step_flow(RCC* rccs, Grouped_Polynomial flow_equation, long double tol){
   for(i=0;i<flow_equation.length;i++){
     if(flow_equation.indices[i]>=0){
       evalcoef(*rccs, flow_equation.coefs[i], new_rccs+i);
-      // if the new rcc is too small, then ignore it
-      if(fabs(new_rccs[i])<tol){
-	new_rccs[i]=0.;
-      }
     }
   }
 
@@ -126,7 +111,6 @@ int step_flow(RCC* rccs, Grouped_Polynomial flow_equation, long double tol){
   }
 
   // free memory
-  free_Int_Array(computed);
   free(new_rccs);
   return(0);
 }

src/flow.h

@@ -21,14 +21,12 @@ Compute flow numerically
 #ifndef NUMERICAL_FLOW_H
 #define NUMERICAL_FLOW_H
 
-
+#include "types.h"
-#include "grouped_polynomial.h"
-#include "rcc.h"
 
 // compute flow
-int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, int niter, long double tol, int display_mode);
+int numerical_flow(Grouped_Polynomial flow_equation, RCC init, Labels labels, int niter, int display_mode);
 // single step
-int step_flow(RCC* rccs, Grouped_Polynomial flow_equation, long double tol);
+int step_flow(RCC* rccs, Grouped_Polynomial flow_equation);
 
 // print the label of an rcc (takes constants and derivatives into account)
 int print_label(int index, Labels labels);

src/flow_mpfr.c

@@ -0,0 +1,128 @@
+/*
+Copyright 2015 Ian Jauslin
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+#include "flow_mpfr.h"
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+// define MPFR_USE_FILE to enable the use of mpfr_printf
+#define MPFR_USE_FILE
+#include <mpfr.h>
+#include "tools.h"
+#include "math.h"
+#include "definitions.cpp"
+#include "number.h"
+#include "array.h"
+#include "coefficient.h"
+#include "flow.h"
+#include "rcc_mpfr.h"
+
+
+
+// compute flow numerically
+int numerical_flow_mpfr(Grouped_Polynomial flow_equation, RCC_mpfr init, Labels labels, int niter, int display_mode){
+  // running coupling contants
+  RCC_mpfr rccs=init;
+  int i,j;
+
+  if(display_mode==DISPLAY_NUMERICAL){
+    // print labels
+    printf("%5s  ","n");
+    for(j=0;j<rccs.length;j++){
+      print_label(rccs.indices[j], labels);
+    }
+    printf("\n\n");
+
+    // print initial values
+    printf("%5d  ",0);
+    for(j=0;j<rccs.length;j++){
+      mpfr_printf("% 14.7Re  ",rccs.values[j]);
+    }
+    printf("\n");
+  }
+
+  for(i=0;i<niter;i++){
+    // compute a single step
+    step_flow_mpfr(&rccs, flow_equation);
+    // convert ls to alphas
+    if(display_mode==DISPLAY_NUMERICAL){
+      // print the result
+      printf("%5d  ",i+1);
+      for(j=0;j<rccs.length;j++){
+	mpfr_printf("% 14.7Re  ",rccs.values[j]);
+      }
+      printf("\n");
+    }
+  }
+
+  if(display_mode==DISPLAY_NUMERICAL){
+    // print labels
+    printf("\n");
+    printf("%5s  ","n");
+    for(j=0;j<rccs.length;j++){
+      print_label(rccs.indices[j], labels);
+    }
+    printf("\n\n");
+  }
+
+  if(display_mode==DISPLAY_FINAL){
+    RCC_mpfr_print(rccs);
+  }
+
+  return(0);
+}
+
+// single step in the flow
+int step_flow_mpfr(RCC_mpfr* rccs, Grouped_Polynomial flow_equation){
+  int i;
+  mpfr_t* res;
+
+  // security: this function assumes that the length of the rcc and the flow_equation are the same
+  if((*rccs).length!=flow_equation.length){
+    fprintf(stderr,"error: mismatch in the size of the flow equation and the rccs");
+    exit(-1);
+  }
+  
+  res=calloc((*rccs).length,sizeof(mpfr_t));
+
+  // compute the constants first
+  for(i=0;i<flow_equation.length;i++){
+    if(flow_equation.indices[i]<0){
+      evalcoef_mpfr(*rccs, flow_equation.coefs[i], res[i]);
+      mpfr_set((*rccs).values[i], res[i], MPFR_RNDN);
+    }
+  }
+
+  // for each equation
+  for(i=0;i<flow_equation.length;i++){
+    if(flow_equation.indices[i]>=0){
+      evalcoef_mpfr(*rccs, flow_equation.coefs[i], res[i]);
+    }
+  }
+
+  // set new rccs
+  for(i=0;i<flow_equation.length;i++){
+    mpfr_set((*rccs).values[i], res[i], MPFR_RNDN);
+    mpfr_clear(res[i]);
+  }
+
+  // free memory
+  free(res);
+  return(0);
+}

src/flow_mpfr.h

@@ -0,0 +1,32 @@
+/*
+Copyright 2015 Ian Jauslin
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+/*
+Compute flow numerically
+*/
+
+#ifndef NUMERICAL_FLOW_MPFR_H
+#define NUMERICAL_FLOW_MPFR_H
+
+
+#include "types.h"
+
+// compute flow
+int numerical_flow_mpfr(Grouped_Polynomial flow_equation, RCC_mpfr init, Labels labels, int niter, int display_mode);
+// single step
+int step_flow_mpfr(RCC_mpfr* rccs, Grouped_Polynomial flow_equation);
+
+#endif

src/grouped_polynomial.c

@@ -732,7 +732,7 @@ int char_array_to_Grouped_Polynomial(Char_Array str, Grouped_Polynomial* output)
 }
 
 
-// evaluate an equation on a vector
+// eValuate an equation on a vector
 int evaleq(RCC* rccs, Grouped_Polynomial poly){
   int i;
   long double* res=calloc((*rccs).length,sizeof(long double));
@@ -762,4 +762,32 @@ int evaleq(RCC* rccs, Grouped_Polynomial poly){
   return(0);
 
 }
+// evaluate an equation on a vector (using mpfr floats)
+int evaleq_mpfr(RCC_mpfr* rccs, Grouped_Polynomial poly){
+  int i;
+  mpfr_t* res;
+
+  if((*rccs).length!=poly.length){
+    fprintf(stderr, "error: trying to evaluate an flow equation with %d components on an rcc with %d\n",poly.length,(*rccs).length);
+    exit(-1);
+  }
+
+  res=calloc((*rccs).length,sizeof(mpfr_t));
+
+  // for each equation
+  for(i=0;i<poly.length;i++){
+    evalcoef_mpfr(*rccs, poly.coefs[i], res[i]);
+  }
+
+  // copy res to rccs
+  for(i=0;i<(*rccs).length;i++){
+    mpfr_set((*rccs).values[i], res[i], MPFR_RNDN);
+    mpfr_clear(res[i]);
+  }
+
+  // free memory
+  free(res);
+  return(0);
+}
+
 

src/grouped_polynomial.h

@@ -70,5 +70,7 @@ int char_array_to_Grouped_Polynomial(Char_Array str, Grouped_Polynomial* output)
 
 // evaluate an equation on an RCC
 int evaleq(RCC* rccs, Grouped_Polynomial poly);
+// evaluate an equation on a vector (using mpfr floats)
+int evaleq_mpfr(RCC_mpfr* rccs, Grouped_Polynomial poly);
 
 #endif

src/meantools.c

@@ -108,7 +108,7 @@ int read_args_meantools(int argc,const char* argv[], Str_Array* str_args, Meanto
 
 // print usage message
 int print_usage_meantools(){
-  printf("\nusage:\n   meantools exp <filename>\n   meantools derive [-d derivatives] -V <variables> <filename>\n   meantools eval -R <rccs> <filename>\n\n");
+  printf("\nusage:\n   meantools exp [config_file]\n   meantools derive [-d derivatives] [-V variables] [-C] [config_file]\n   meantools eval [-R values] [-P precision] [-E max_exponent] [config_file]\n\n");
   return(0);
 }
 

src/meantools_eval.c

@@ -18,16 +18,22 @@ limitations under the License.
 
 #include <stdio.h>
 #include <stdlib.h>
+#include <mpfr.h>
 #include "parse_file.h"
 #include "cli_parser.h"
 #include "grouped_polynomial.h"
 #include "array.h"
 #include "rcc.h"
+#include "rcc_mpfr.h"
 
 
 #define CP_FLAG_RCCS 1
+#define CP_FLAG_MPFR_PREC 2
+#define CP_FLAG_MPFR_EXP 3
 // read command line arguments
 int tool_eval_read_args(int argc, const char* argv[], Str_Array* str_args, Meantools_Options* opts){
+  // temporary long int
+  long int tmp_lint;
   // file to read the polynomial from in flow mode
   const char* file="";
   // whether a file was specified on the command-line
@@ -40,6 +46,9 @@ int tool_eval_read_args(int argc, const char* argv[], Str_Array* str_args, Meant
   // defaults
   // mark rccstring so that it can be recognized whether it has been set or not
   (*opts).eval_rccstring.length=-1;
+  // no mpfr
+  (*opts).mpfr_prec=0;
+  (*opts).mpfr_emax=0;
 
   // loop over arguments
   for(i=2;i<argc;i++){
@@ -51,6 +60,14 @@ int tool_eval_read_args(int argc, const char* argv[], Str_Array* str_args, Meant
 	case 'R':
 	  flag=CP_FLAG_RCCS;
 	  break;
+	// mpfr precision
+	case 'P':
+	  flag=CP_FLAG_MPFR_PREC;
+	  break;
+	// mpfr emax
+	case 'E':
+	  flag=CP_FLAG_MPFR_EXP;
+	  break;
 	}
       }
     }
@@ -59,6 +76,18 @@ int tool_eval_read_args(int argc, const char* argv[], Str_Array* str_args, Meant
       str_to_char_array((char*)argv[i], &((*opts).eval_rccstring));
       flag=0;
     }
+    // mpfr precision
+    else if(flag==CP_FLAG_MPFR_PREC){
+      sscanf(argv[i],"%ld",&tmp_lint);
+      (*opts).mpfr_prec=(mpfr_prec_t)tmp_lint;
+      flag=0;
+    }
+    // mpfr emax
+    else if(flag==CP_FLAG_MPFR_EXP){
+      sscanf(argv[i],"%ld",&tmp_lint);
+      (*opts).mpfr_emax=(mpfr_exp_t)tmp_lint;
+      flag=0;
+    }
     // read file name from command-line
     else{
       file=argv[i];
@@ -78,9 +107,21 @@ int tool_eval(Str_Array str_args, Meantools_Options opts){
   int arg_index;
   // rccs
   RCC rccs;
+  RCC_mpfr rccs_mpfr;
   // flow equation
   Grouped_Polynomial flow_equation;
+  // whether or not to use mpfr floats
+  int mpfr_flag=0;
 
+  // set mpfr defaults
+  if(opts.mpfr_prec!=0){
+    mpfr_set_default_prec(opts.mpfr_prec);
+    mpfr_flag=1;
+  }
+  if(opts.mpfr_emax!=0){
+    mpfr_set_emax(opts.mpfr_emax);
+    mpfr_flag=1;
+  }
 
   // parse flow equation
   // if there is a unique argument, assume it is the flow equation
@@ -108,22 +149,33 @@ int tool_eval(Str_Array str_args, Meantools_Options opts){
   }
 
   // initialize the rccs
-  prepare_init(flow_equation.indices,flow_equation.length,&rccs);
+  if(mpfr_flag==0){
+    prepare_init(flow_equation.indices,flow_equation.length,&rccs);
+  }
+  else{
+    prepare_init_mpfr(flow_equation.indices,flow_equation.length,&rccs_mpfr);
+  }
   // read rccs from string
   if(opts.eval_rccstring.length!=-1){
-    parse_init_cd(opts.eval_rccstring, &rccs);
+    parse_init_cd(opts.eval_rccstring, &rccs, &rccs_mpfr, mpfr_flag);
     free_Char_Array(opts.eval_rccstring);
   }
 
   // evaluate
-  evaleq(&rccs, flow_equation);
+  if(mpfr_flag==0){
+    evaleq(&rccs, flow_equation);
+    RCC_print(rccs);
+    free_RCC(rccs);
+  }
+  else{
+    evaleq_mpfr(&rccs_mpfr, flow_equation);
+    RCC_mpfr_print(rccs_mpfr);
+    free_RCC_mpfr(rccs_mpfr);
+  }
 
-  // print
-  RCC_print(rccs);
 
   // free memory
   free_Grouped_Polynomial(flow_equation);
-  free_RCC(rccs);
   return(0);
 }
 

src/number.c

@@ -18,6 +18,10 @@ limitations under the License.
 #include <stdlib.h>
 #include <stdio.h>
 #include <math.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+#include <mpfr.h>
 #include "istring.h"
 #include "definitions.cpp"
 #include "tools.h"
@@ -358,6 +362,30 @@ long double number_double_val(Number x){
   }
   return(ret);
 }
+// approximate numerical expression (as mpfr float)
+int number_mpfr_val(mpfr_t out, Number x){
+  int i;
+  // auxiliary variables (do not initialize A)
+  mpfr_t A,b,c;
+  mpfr_inits(b,c, (mpfr_ptr)NULL);
+
+  mpfr_init(out);
+  mpfr_set_zero(out,1);
+
+  for(i=0;i<x.length;i++){
+    if(x.scalars[i].numerator!=0){
+      mpfr_sqrt_ui(b, x.base[i], MPFR_RNDN);
+      Q_mpfr_value(A, x.scalars[i]);
+      mpfr_mul(c, A, b, MPFR_RNDN);
+      mpfr_add(b, out, c, MPFR_RNDN);
+      mpfr_set(out, b, MPFR_RNDN);
+    }
+  }
+
+  mpfr_clears(A,b,c, (mpfr_ptr)NULL);
+
+  return(0);
+}
 
 
 // print to string

src/number.h

@@ -98,6 +98,8 @@ int number_is_zero(Number x);
 
 // approximate numerical expression
 long double number_double_val(Number x);
+// approximate numerical expression (as mpfr float)
+int number_mpfr_val(mpfr_t out, Number x);
 
 // print to string
 int number_sprint(Number number, Char_Array* out);

src/numkondo.c

@@ -30,6 +30,7 @@ Compute the flow of a flow equation numerically
 
 // rccs
 #include "rcc.h"
+#include "rcc_mpfr.h"
 // grouped representation of polynomials
 #include "grouped_polynomial.h"
 // command line parser
@@ -38,6 +39,7 @@ Compute the flow of a flow equation numerically
 #include "parse_file.h"
 // numerical flow
 #include "flow.h"
+#include "flow_mpfr.h"
 // arrays
 #include "array.h"
 
@@ -68,10 +70,13 @@ int main (int argc, const char* argv[]){
 
 // parse command-line arguments
 #define CP_FLAG_NITER 1
-#define CP_FLAG_TOL 2
+#define CP_FLAG_RCCS 2
-#define CP_FLAG_RCCS 3
+#define CP_FLAG_MPFR_PREC 3
+#define CP_FLAG_MPFR_EXP 4
 int read_args_numkondo(int argc,const char* argv[], Str_Array* str_args, Numkondo_Options* opts){
   int i;
+  // temporary long int
+  long int tmp_lint;
   // pointers
   char* ptr;
   // file to read the polynomial from in flow mode
@@ -92,10 +97,11 @@ int read_args_numkondo(int argc,const char* argv[], Str_Array* str_args, Numkond
   (*opts).display_mode=DISPLAY_NUMERICAL;
   // default niter
   (*opts).niter=100;
-  // default to 0 tolerance
-  (*opts).tol=0;
   // mark rccstring so that it can be recognized whether it has been set or not
   (*opts).eval_rccstring.length=-1;
+  // no mpfr
+  (*opts).mpfr_prec=0;
+  (*opts).mpfr_emax=0;
 
 // loop over arguments
 for(i=1;i<argc;i++){
@@ -111,14 +117,18 @@ for(i=1;i<argc;i++){
 	case 'N':
 	  flag=CP_FLAG_NITER;
 	  break;
-	// tolerance
-	case 'D':
-	  flag=CP_FLAG_TOL;
-	  break;
 	// initial condition
 	case 'I':
 	  flag=CP_FLAG_RCCS;
 	  break;
+	// mpfr precision
+	case 'P':
+	  flag=CP_FLAG_MPFR_PREC;
+	  break;
+	// mpfr emax
+	case 'E':
+	  flag=CP_FLAG_MPFR_EXP;
+	  break;
 	// print version
 	case 'v':
 	  printf("numkondo " VERSION "\n");
@@ -134,16 +144,23 @@ for(i=1;i<argc;i++){
       // reset flag
       flag=0;
     }
-    // tolerance
-    else if (flag==CP_FLAG_TOL){
-      sscanf(argv[i],"%Lf",&((*opts).tol));
-      flag=0;
-    }
     // init condition
     else if(flag==CP_FLAG_RCCS){
       str_to_char_array((char*)argv[i], &((*opts).eval_rccstring));
       flag=0;
     }
+    // mpfr precision
+    else if(flag==CP_FLAG_MPFR_PREC){
+      sscanf(argv[i],"%ld",&tmp_lint);
+      (*opts).mpfr_prec=(mpfr_prec_t)tmp_lint;
+      flag=0;
+    }
+    // mpfr emax
+    else if(flag==CP_FLAG_MPFR_EXP){
+      sscanf(argv[i],"%ld",&tmp_lint);
+      (*opts).mpfr_emax=(mpfr_exp_t)tmp_lint;
+      flag=0;
+    }
     // read file name from command-line
     else{
       file=argv[i];
@@ -158,7 +175,7 @@ for(i=1;i<argc;i++){
 
 // print usage message
 int print_usage_numkondo(){
-  printf("\nusage:\n   numkondo [-F] [-N niter] [-D tolerance] [-I initial_condition] <filename>\n\n");
+  printf("\nusage:\n   numkondo [-F] [-N niter] [-I initial_condition] [-P precision] [-E exponent_range] <filename>\n\n");
   return(0);
 }
 
@@ -171,8 +188,22 @@ int numflow(Str_Array str_args, Numkondo_Options opts){
   Labels labels;
   // initial condition
   RCC init_cd;
+  RCC_mpfr init_cd_mpfr;
   // flow equation
   Grouped_Polynomial flow_equation;
+  // whether or not to use mpfr floats
+  int mpfr_flag=0;
+
+  // set mpfr defaults
+  if(opts.mpfr_prec!=0){
+    mpfr_set_default_prec(opts.mpfr_prec);
+    mpfr_flag=1;
+  }
+  if(opts.mpfr_emax!=0){
+    mpfr_set_emax(opts.mpfr_emax);
+    mpfr_flag=1;
+  }
+
 
   // parse id table
   arg_index=find_str_arg("labels", str_args);
@@ -207,20 +238,31 @@ int numflow(Str_Array str_args, Numkondo_Options opts){
     }
   }
   // initialize the rccs
-  prepare_init(flow_equation.indices,flow_equation.length,&init_cd);
+  if(mpfr_flag==0){
+    prepare_init(flow_equation.indices,flow_equation.length,&init_cd);
+  }
+  else{
+    prepare_init_mpfr(flow_equation.indices,flow_equation.length,&init_cd_mpfr);
+  }
+
   // read rccs from string
   if(opts.eval_rccstring.length!=-1){
-    parse_init_cd(opts.eval_rccstring, &init_cd);
+    parse_init_cd(opts.eval_rccstring, &init_cd, &init_cd_mpfr, mpfr_flag);
     free_Char_Array(opts.eval_rccstring);
   }
 
-  numerical_flow(flow_equation, init_cd, labels, opts.niter, opts.tol, opts.display_mode);
+  if(mpfr_flag==0){
+    numerical_flow(flow_equation, init_cd, labels, opts.niter, opts.display_mode);
+    free_RCC(init_cd);
+  }
+  else{
+    numerical_flow_mpfr(flow_equation, init_cd_mpfr, labels, opts.niter, opts.display_mode);
+    free_RCC_mpfr(init_cd_mpfr);
+  }
 
-  free_RCC(init_cd);
 
   // free memory
   free_Labels(labels);
   free_Grouped_Polynomial(flow_equation);
   return(0);
 }
-

src/parse_file.c

@@ -18,12 +18,14 @@ limitations under the License.
 
 #include <stdio.h>
 #include <stdlib.h>
+#include <mpfr.h>
 #include "array.h"
 #include "fields.h"
 #include "rational.h"
 #include "number.h"
 #include "polynomial.h"
 #include "rcc.h"
+#include "rcc_mpfr.h"
 #include "definitions.cpp"
 #include "istring.h"
 #include "tools.h"
@@ -716,8 +718,8 @@ int parse_labels(Char_Array str_labels, Labels* labels){
 }
 
 
-// read initial condition for numerical computation
+// read initial condition for numerical computation (using either RCC or RCC_mpfr, as specified by mpfr_flag)
-int parse_init_cd(Char_Array init_cd, RCC* init){
+int parse_init_cd(Char_Array init_cd, RCC* init, RCC_mpfr* init_mpfr, int mpfr_flag){
   char* buffer=calloc(init_cd.length+1,sizeof(char));
   char* buffer_ptr=buffer;
   int index=0;
@@ -738,7 +740,12 @@ int parse_init_cd(Char_Array init_cd, RCC* init){
       // new term
       case ',':
 	// write init
-	sscanf(buffer,"%Lf",(*init).values+intlist_find_err((*init).indices,(*init).length,index));
+	if(mpfr_flag==0){
+	  sscanf(buffer,"%Lf",(*init).values+intlist_find_err((*init).indices,(*init).length,index));
+	}
+	else{
+	  mpfr_strtofr((*init_mpfr).values[intlist_find_err((*init_mpfr).indices,(*init_mpfr).length,index)], buffer, &buffer_ptr, 10, MPFR_RNDN);
+	}
 	// reset buffer
 	buffer_ptr=buffer;
 	*buffer_ptr='\0';
@@ -782,7 +789,12 @@ int parse_init_cd(Char_Array init_cd, RCC* init){
   }
 
   // write init
-  sscanf(buffer,"%Lf",(*init).values+unlist_find((*init).indices,(*init).length,index));
+  if(mpfr_flag==0){
+    sscanf(buffer,"%Lf",(*init).values+intlist_find_err((*init).indices,(*init).length,index));
+  }
+  else{
+    mpfr_strtofr((*init_mpfr).values[intlist_find_err((*init_mpfr).indices,(*init_mpfr).length,index)], buffer, &buffer_ptr, 10, MPFR_RNDN);
+  }
 
   free(buffer);
   return(0);
@@ -806,3 +818,20 @@ int prepare_init(int* indices, int length, RCC* init){
   }
   return(0);
 }
+// set indices and length of init for RCC_mpfr
+int prepare_init_mpfr(int* indices, int length, RCC_mpfr* init){
+  int i;
+  init_RCC_mpfr(init, length);
+  for(i=0;i<length;i++){
+    (*init).indices[i]=indices[i];
+    // set constants to 1
+    if(indices[i]<0 && indices[i]>-DOFFSET){
+      mpfr_set_ui((*init).values[i],1,MPFR_RNDN);
+    }
+    else{
+      mpfr_set_zero((*init).values[i],1);
+    }
+
+  }
+  return(0);
+}

src/parse_file.h

@@ -47,10 +47,12 @@ int parse_input_id_table(Char_Array str_idtable, Id_Table* idtable, Fields_Table
 // parse a list of labels
 int parse_labels(Char_Array str_labels, Labels* labels);
 
-// parse the initial condition
+// read initial condition for numerical computation (using either RCC or RCC_mpfr, as specified by mpfr_flag)
-int parse_init_cd(Char_Array init_cd, RCC* init);
+int parse_init_cd(Char_Array init_cd, RCC* init, RCC_mpfr* init_mpfr, int mpfr_flag);
 
 // set indices and length of init
 int prepare_init(int* indices, int length, RCC* init);
+// set indices and length of init for RCC_mpfr
+int prepare_init_mpfr(int* indices, int length, RCC_mpfr* init);
 
 #endif

src/rational_float.c

@@ -19,21 +19,14 @@ limitations under the License.
 #include "rational_float.h"
 #include <stdio.h>
 #include <stdlib.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+#include <mpfr.h>
 #include "istring.h"
 #include "array.h"
 #include "math.h"
 
-Q quot(long double p, long double q){
-  Q ret;
-  if(q==0){
-    fprintf(stderr,"error: %Lf/%Lf is ill defined\n",p,q);
-    exit(-1);
-  }
-  ret.numerator=p;
-  ret.denominator=q;
-  return(ret);
-}
-
 // add
 Q Q_add(Q x1,Q x2){
   Q ret;
@@ -141,6 +134,16 @@ long double lcm(long double x,long double y){
 double Q_double_value(Q q){
   return(1.0*q.numerator/q.denominator);
 }
+// approximate value as mpfr float
+int Q_mpfr_value(mpfr_t out, Q q){
+  mpfr_t x;
+  mpfr_init(out);
+  mpfr_init(x);
+  mpfr_set_ld(x, q.denominator, MPFR_RNDN);
+  mpfr_ld_div(out, q.numerator, x, MPFR_RNDN);
+  mpfr_clear(x);
+  return(0);
+}
 
 
 // print to string

src/rational_float.h

@@ -54,6 +54,8 @@ long double lcm(long double x,long double y);
 
 // approximate value as double
 double Q_double_value(Q q);
+// approximate value as mpfr float
+int Q_mpfr_value(mpfr_t out, Q q);
 
 // print to string
 int Q_sprint(Q num, Char_Array* out);

src/rational_int.c

@@ -19,6 +19,10 @@ limitations under the License.
 #include "rational_int.h"
 #include <stdio.h>
 #include <stdlib.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+#include <mpfr.h>
 #include "istring.h"
 #include "array.h"
 
@@ -135,6 +139,16 @@ long int lcm(long int x,long int y){
 double Q_double_value(Q q){
   return(1.0*q.numerator/q.denominator);
 }
+// approximate value as mpfr float
+int Q_mpfr_value(mpfr_t out, Q q){
+  mpfr_t x;
+  mpfr_init(out);
+  mpfr_init(x);
+  mpfr_set_si(x, q.denominator, MPFR_RNDN);
+  mpfr_si_div(out, q.numerator, x, MPFR_RNDN);
+  mpfr_clear(x);
+  return(0);
+}
 
 
 // print to string

src/rational_int.h

@@ -49,6 +49,8 @@ long int lcm(long int x,long int y);
 
 // approximate value as double
 double Q_double_value(Q q);
+// approximate value as mpfr float
+int Q_mpfr_value(mpfr_t out, Q q);
 
 // print to string
 int Q_sprint(Q num, Char_Array* out);

src/rcc_mpfr.c

@@ -0,0 +1,124 @@
+/*
+Copyright 2015 Ian Jauslin
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+#include "rcc_mpfr.h"
+#include <stdio.h>
+#include <stdlib.h>
+#include <stdarg.h>
+// define MPFR_USE_VA_LIST to enable the use of mpfr_inits and mpfr_clears
+#define MPFR_USE_VA_LIST
+// define MPFR_USE_FILE to enable the use of mpfr_printf
+#define MPFR_USE_FILE
+#include <mpfr.h>
+#include <math.h>
+#include "array.h"
+
+// init
+int init_RCC_mpfr(RCC_mpfr* rcc_mpfr, int size){
+  int i;
+  (*rcc_mpfr).values=calloc(size,sizeof(mpfr_t));
+  (*rcc_mpfr).indices=calloc(size,sizeof(int));
+  (*rcc_mpfr).length=size;
+  for(i=0;i<size;i++){
+    mpfr_init((*rcc_mpfr).values[i]);
+  }
+
+  return(0);
+}
+
+int free_RCC_mpfr(RCC_mpfr rcc_mpfr){
+  int i;
+  for(i=0;i<rcc_mpfr.length;i++){
+    mpfr_clear(rcc_mpfr.values[i]);
+  }
+  free(rcc_mpfr.values);
+  free(rcc_mpfr.indices);
+  return(0);
+}
+
+// set a given element of an rcc_mpfr
+int RCC_mpfr_set_elem(mpfr_t value, int index, RCC_mpfr* rcc_mpfr, int pos){
+  mpfr_set((*rcc_mpfr).values[pos], value, MPFR_RNDN);
+  (*rcc_mpfr).indices[pos]=index;
+  return(0);
+}
+
+int RCC_mpfr_cpy(RCC_mpfr input,RCC_mpfr* output){
+  int i;
+
+  init_RCC_mpfr(output,input.length);
+  for(i=0;i<input.length;i++){
+    RCC_mpfr_set_elem(input.values[i], input.indices[i], output, i);
+  }
+  return(0);
+}
+
+// concatenate rcc_mpfr
+int RCC_mpfr_concat(RCC_mpfr rcc_mpfr1, RCC_mpfr rcc_mpfr2, RCC_mpfr* output){
+  int i;
+
+  init_RCC_mpfr(output,rcc_mpfr1.length+rcc_mpfr2.length);
+
+  for(i=0;i<rcc_mpfr1.length;i++){
+    RCC_mpfr_set_elem(rcc_mpfr1.values[i], rcc_mpfr1.indices[i], output, i);
+  }
+
+  for(i=0;i<rcc_mpfr2.length;i++){
+    RCC_mpfr_set_elem(rcc_mpfr2.values[i], rcc_mpfr2.indices[i], output, i+rcc_mpfr1.length);
+  }
+  
+  return(0);
+}
+
+// append an rcc_mpfr at the end of another
+int RCC_mpfr_append(RCC_mpfr input, RCC_mpfr* output){
+  int i;
+  for(i=0;i<input.length;i++){
+    RCC_mpfr_set_elem(input.values[i], input.indices[i], output, i+(*output).length);
+  }
+  (*output).length+=input.length;
+  return(0);
+}
+
+// print an rcc_mpfr vector with maximal precision
+int RCC_mpfr_print(RCC_mpfr rcc_mpfr){
+  int j;
+  // the printf format
+  Char_Array printf_format;
+  // number of digits in output
+  int size;
+
+  // compute size
+  // WARNING: assumes mpfr_default_prec is an int
+  size=mpfr_get_default_prec()*log10(2)-1;
+
+  init_Char_Array(&printf_format,12);
+  char_array_snprintf(&printf_format,"%%d:%%.%dRe",size);
+
+  for(j=0;j<rcc_mpfr.length;j++){
+    mpfr_printf(printf_format.str,rcc_mpfr.indices[j],rcc_mpfr.values[j]);
+    if(j<rcc_mpfr.length-1){
+      printf(",\n");
+    }
+    else{
+      printf("\n");
+    }
+  }
+
+  free_Char_Array(printf_format);
+
+  return(0);
+}

src/rcc_mpfr.h

@@ -0,0 +1,43 @@
+/*
+Copyright 2015 Ian Jauslin
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+/*
+ RCC_mpfr struct
+ 
+ This data type is similar to RCC but the values of the rcc's are specified as mpfr floats
+*/
+
+#ifndef RCC_MPFR_H
+#define RCC_MPFR_H
+
+#include "types.h"
+
+// init
+int init_RCC_mpfr(RCC_mpfr* rcc_mpfr, int size);
+int free_RCC_mpfr(RCC_mpfr rcc_mpfr);
+// set an element of an rcc_mpfr
+int RCC_mpfr_set_elem(mpfr_t value, int index, RCC_mpfr* rcc_mpfr, int pos);
+// copy
+int RCC_mpfr_cpy(RCC_mpfr input,RCC_mpfr* output);
+// concatenate 2 rcc_mpfr_mpfr
+int RCC_mpfr_concat(RCC_mpfr rcc_mpfr_mpfr1, RCC_mpfr rcc_mpfr_mpfr2, RCC_mpfr* output);
+// append an rcc_mpfr to another
+int RCC_mpfr_append(RCC_mpfr input, RCC_mpfr* output);
+
+// print an rcc_mpfr vector with maximal precision
+int RCC_mpfr_print(RCC_mpfr rcc_mpfr_mpfr);
+
+#endif

src/types.h

@@ -21,6 +21,8 @@ limitations under the License.
 #ifndef TYPES_H
 #define TYPES_H
 
+#include <mpfr.h>
+
 
 // rational number
 typedef struct Q{
@@ -114,6 +116,12 @@ typedef struct RCC{
   int* indices;
   int length;
 } RCC;
+// rcc using mpfr floats
+typedef struct RCC_mpfr{
+  mpfr_t* values;
+  int* indices;
+  int length;
+} RCC_mpfr;
 
 // identities between fields
 typedef struct Identities{
@@ -174,25 +182,6 @@ typedef struct Id_Table{
   int memory;
 } Id_Table;
 
-/*
-// polynomial scalar and vectors
-typedef struct Polynomial_Scalar{
-  Coefficient coef;
-  int* indices;
-  int length;
-} Polynomial_Scalar;
-typedef struct Polynomial_Vector{
-  Coefficient* coefv;
-  int* indices;
-  int length;
-} Polynomial_Vector;
-typedef struct Polynomial_Matrix{
-  Coefficient** coefm;
-  int* indices;
-  int length;
-} Polynomial_Matrix;
-*/
-
 
 // command line options
 typedef struct Meankondo_Options{
@@ -203,8 +192,9 @@ typedef struct Meankondo_Options{
 typedef struct Numkondo_Options{
   int display_mode;
   int niter;
-  long double tol;
   Char_Array eval_rccstring;
+  mpfr_prec_t mpfr_prec;
+  mpfr_exp_t mpfr_emax;
 } Numkondo_Options;
 
 typedef struct Meantools_Options{
@@ -213,6 +203,8 @@ typedef struct Meantools_Options{
   Int_Array deriv_vars;
   Char_Array eval_rccstring;
   int chain;
+  mpfr_prec_t mpfr_prec;
+  mpfr_exp_t mpfr_emax;
 } Meantools_Options;
 
 typedef struct Kondopp_Options{