Remove avg_window option: always use print_freq

src/main.c

@@ -28,7 +28,6 @@ typedef struct nstrophy_parameters {
   double delta;
   double L;
   unsigned int print_freq;
-  unsigned int avg_window;
   int seed;
   unsigned int starting_time;
   unsigned int driving;
@@ -44,7 +43,7 @@ int print_params(nstrophy_parameters parameters, char* initfile_str, FILE* file)
 // read command line arguments
 int read_args(int argc, const char* argv[], char** params, unsigned int* command, unsigned int* nthreads, char** savefile_str);
 int read_params(char* param_str, nstrophy_parameters* parameters, char** initfile_str);
-int set_parameter(char* lhs, char* rhs, nstrophy_parameters* parameters, bool* setN1, bool* setN2, bool* setavg_window, char** initfile_str);
+int set_parameter(char* lhs, char* rhs, nstrophy_parameters* parameters, bool* setN1, bool* setN2, char** initfile_str);
 
 // set driving force
 _Complex double* set_driving(nstrophy_parameters parameters);
@@ -149,7 +148,7 @@ int main (
   else if(command==COMMAND_EEA){
     // register signal handler to handle aborts
     signal(SIGINT, sig_handler);
-    eea(parameters.K1, parameters.K2, parameters.N1, parameters.N2, parameters.nsteps, parameters.nu, parameters.delta, parameters.L, u0, g, parameters.irreversible, parameters.print_freq, parameters.avg_window, parameters.starting_time, nthreads, savefile, (char*)argv[0], param_str, savefile_str);
+    eea(parameters.K1, parameters.K2, parameters.N1, parameters.N2, parameters.nsteps, parameters.nu, parameters.delta, parameters.L, u0, g, parameters.irreversible, parameters.print_freq, parameters.starting_time, nthreads, savefile, (char*)argv[0], param_str, savefile_str);
   }
   else if(command==COMMAND_QUIET){
     quiet(parameters.K1, parameters.K2, parameters.N1, parameters.N2, parameters.nsteps, parameters.nu, parameters.delta, parameters.L, u0, g, parameters.irreversible, nthreads, savefile);
@@ -323,8 +322,6 @@ int read_params(
   // whether N was set explicitly
   bool setN1=false;
   bool setN2=false;
-  // whether avg_window was set explicitly
-  bool setavg_window=false;
   // whether lhs (false is rhs)
   bool lhs=true;
 
@@ -365,7 +362,7 @@ int read_params(
 	break;
       case ';':
 	//set parameter
-	ret=set_parameter(buffer_lhs, buffer_rhs, parameters, &setN1, &setN2, &setavg_window, initfile_str);
+	ret=set_parameter(buffer_lhs, buffer_rhs, parameters, &setN1, &setN2, initfile_str);
 	if(ret<0){
 	  return ret;
 	}
@@ -392,7 +389,7 @@ int read_params(
 
     // set last param
     if (*param_str!='\0'){
-      ret=set_parameter(buffer_lhs, buffer_rhs, parameters, &setN1, &setN2, &setavg_window, initfile_str);
+      ret=set_parameter(buffer_lhs, buffer_rhs, parameters, &setN1, &setN2, initfile_str);
       if(ret<0){
 	return ret;
       }
@@ -410,10 +407,6 @@ int read_params(
   if (!setN2){
     parameters->N2=smallest_pow2(3*(parameters->K2));
   }
-  // if avg_window is not set explicitly, set it to print_freq
-  if (!setavg_window){
-    parameters->avg_window=parameters->print_freq;
-  }
 
   return(0);
 }
@@ -426,7 +419,6 @@ int set_parameter(
   nstrophy_parameters* parameters,
   bool* setN1,
   bool* setN2,
-  bool* setavg_window,
   char** initfile_str
 ){
   int ret;
@@ -533,14 +525,6 @@ int set_parameter(
       return(-1);
     }
   }
-  else if (strcmp(lhs,"avg_window")==0){
-    ret=sscanf(rhs,"%u",&(parameters->avg_window));
-    if(ret!=1){
-      fprintf(stderr, "error: parameter 'avg_window' should be an integer\n       got '%s'\n",rhs);
-      return(-1);
-    }
-    *setavg_window=true;
-  }
   else if (strcmp(lhs,"random_seed")==0){
     ret=sscanf(rhs,"%d",&(parameters->seed));
     if(ret!=1){

src/navier-stokes.c

@@ -91,7 +91,6 @@ int eea(
   _Complex double* g,
   bool irreversible,
   unsigned int print_freq,
-  unsigned int running_avg_window,
   unsigned int starting_time,
   unsigned int nthreads,
   FILE* savefile,
@@ -106,11 +105,7 @@ int eea(
   _Complex double* tmp3;
   double alpha, energy, enstrophy;
   double avg_e,avg_a,avg_en;
-  // quantities needed to compute averages
-  double *save_print_e, *save_print_a, *save_print_en;
-  double *save_print_short_e, *save_print_short_a, *save_print_short_en;
   // index
-  unsigned int i;
   unsigned int t;
   fft_vect fft1;
   fft_vect fft2;
@@ -126,27 +121,8 @@ int eea(
   avg_a=0;
   avg_en=0;
 
-  // need this for running average
+  // special first case when starting_time is not a multiple of print_freq
-  unsigned int short_len=running_avg_window % print_freq;
+  unsigned int first_box = print_freq - (starting_time % print_freq);
-  // number of full print intervals in running average window
-  unsigned int nr_print_in_window = (running_avg_window-short_len)/print_freq;
-  double avg_print_e=0;
-  double avg_print_a=0;
-  double avg_print_en=0;
-  double avg_print_short_e=0;
-  double avg_print_short_a=0;
-  double avg_print_short_en=0;
-
-  // save e a en for running average
-  // only need to save if window is non zero
-  if(running_avg_window!=0){
-    save_print_e=calloc(sizeof(double), nr_print_in_window);
-    save_print_a=calloc(sizeof(double), nr_print_in_window);
-    save_print_en=calloc(sizeof(double), nr_print_in_window);
-    save_print_short_e=calloc(sizeof(double), nr_print_in_window+1);
-    save_print_short_a=calloc(sizeof(double), nr_print_in_window+1);
-    save_print_short_en=calloc(sizeof(double), nr_print_in_window+1);
-  }
 
   // iterate
   for(t=starting_time;t<starting_time+nsteps;t++){
@@ -160,78 +136,26 @@ int eea(
     enstrophy=compute_enstrophy(u, K1, K2, L);
     
     // running average
-    // if window=0, then take average over all times
+    // reset averages
-    if(running_avg_window==0){
-      if(t!=0){
-	avg_e=avg_e-(avg_e-energy)/t;
-	avg_a=avg_a-(avg_a-alpha)/t;
-	avg_en=avg_en-(avg_en-enstrophy)/t;
-      }
-    }
-    else{
-      // reset print interval averages
     if(t % print_freq == 1){
-	avg_print_e=0;
+      avg_e=0;
-	avg_print_a=0;
+      avg_a=0;
-	avg_print_en=0;
+      avg_en=0;
-	avg_print_short_e=0;
-	avg_print_short_a=0;
-	avg_print_short_en=0;
     }
 
-      // compute average over print interval
+    // compute average
-      avg_print_e=avg_print_e+energy/print_freq;
+    // different computationin first box if starting_time is not a multiple of print_freq
-      avg_print_a=avg_print_a+alpha/print_freq;
+    if(t < starting_time + first_box){
-      avg_print_en=avg_print_en+enstrophy/print_freq;
+      avg_e+=energy/first_box;
-
+      avg_a+=alpha/first_box;
-      // compute average over the last short_len elements of a print interval
+      avg_en+=enstrophy/first_box;
-      if (short_len != 0 && (t % print_freq > print_freq-short_len || t % print_freq == 0)){
+    } else {
-	avg_print_short_e+=energy/short_len;
+      avg_e+=energy/print_freq;
-	avg_print_short_a+=alpha/short_len;
+      avg_a+=alpha/print_freq;
-	avg_print_short_en+=enstrophy/short_len;
+      avg_en+=enstrophy/print_freq;
     }
 
-      if(t % print_freq ==0 && t>starting_time){
+    if(t>starting_time && t%print_freq==0){
-	// compute averages
-	if (t > running_avg_window + starting_time) {
-	  avg_e=save_print_short_e[nr_print_in_window]*((double)short_len/running_avg_window);
-	  avg_a=save_print_short_a[nr_print_in_window]*((double)short_len/running_avg_window);
-	  avg_en=save_print_short_en[nr_print_in_window]*((double)short_len/running_avg_window);
-	  for(i=0;i<nr_print_in_window;i++){
-	    // prevent warnings: these will be initialized as long as t > running_avg_window
-	    #pragma GCC diagnostic push
-	    #pragma GCC diagnostic ignored "-Wmaybe-uninitialized"
-	    avg_e+=save_print_e[i]*((double)print_freq/running_avg_window);
-	    avg_a+=save_print_a[i]*((double)print_freq/running_avg_window);
-	    avg_en+=save_print_en[i]*((double)print_freq/running_avg_window);
-	    #pragma GCC diagnostic pop
-	  }
-	}
-
-	// memorize averages for future use
-	// need to keep track of case ==0, otherwise nr_print_in_window-1 is not an unsigned int
-	if(nr_print_in_window>0){
-	  for(i=0;i<nr_print_in_window-1;i++){
-	    save_print_e[i+1]=save_print_e[i];
-	    save_print_a[i+1]=save_print_a[i];
-	    save_print_en[i+1]=save_print_en[i];
-	  }
-	}
-	for(i=0;i<nr_print_in_window;i++){
-	  save_print_short_e[i+1]=save_print_short_e[i];
-	  save_print_short_a[i+1]=save_print_short_a[i];
-	  save_print_short_en[i+1]=save_print_short_en[i];
-	}
-	save_print_e[0]=avg_print_e;
-	save_print_a[0]=avg_print_a;
-	save_print_en[0]=avg_print_en;
-	save_print_short_e[0]=avg_print_short_e;
-	save_print_short_a[0]=avg_print_short_a;
-	save_print_short_en[0]=avg_print_short_en;
-      }
-    }
-
-    if(t>running_avg_window + starting_time && t%print_freq==0){
       fprintf(stderr,"%d % .8e % .8e % .8e % .8e % .8e % .8e % .8e\n",t,t*delta, avg_a, avg_e, avg_en, alpha, energy, enstrophy);
       printf("%8d % .15e % .15e % .15e % .15e % .15e % .15e % .15e\n",t,t*delta, avg_a, avg_e, avg_en, alpha, energy, enstrophy);
     }
@@ -272,15 +196,6 @@ int eea(
     write_u_bin(u, K1, K2, savefile);
   }
 
-  if(running_avg_window!=0){
-    free(save_print_e);
-    free(save_print_a);
-    free(save_print_en);
-    free(save_print_short_e);
-    free(save_print_short_a);
-    free(save_print_short_en);
-  }
-
   ns_free_tmps(u, tmp1, tmp2, tmp3, fft1, fft2, ifft);
   return(0);
 }

src/navier-stokes.h

@@ -20,7 +20,7 @@ typedef struct fft_vects {
 int uk( int K1, int K2, int N1, int N2, unsigned int nsteps, double nu, double delta, double L, _Complex double* u0, _Complex double* g, bool irreversible, unsigned int print_freq, unsigned int starting_time, unsigned int nthreadsl, FILE* savefile);
 
 // compute energy, enstrophy and alpha
-int eea( int K1, int K2, int N1, int N2, unsigned int nsteps, double nu, double delta, double L, _Complex double* u0, _Complex double* g, bool irreversible, unsigned int print_freq, unsigned int running_avg_window, unsigned int starting_time, unsigned int nthreads, FILE* savefile, char* cmd_string, char* params_string, char* savefile_string);
+int eea( int K1, int K2, int N1, int N2, unsigned int nsteps, double nu, double delta, double L, _Complex double* u0, _Complex double* g, bool irreversible, unsigned int print_freq, unsigned int starting_time, unsigned int nthreads, FILE* savefile, char* cmd_string, char* params_string, char* savefile_string);
 
 // compute solution as a function of time, but do not print anything (useful for debugging)
 int quiet( int K1, int K2, int N1, int N2, unsigned int nsteps, double nu, double delta, double L, _Complex double* u0, _Complex double* g, bool irreversible, unsigned int nthreads, FILE* savefile);